To process well plates in batch, insert (or embed your existing protocol within) a block called “Well Plate batch” (searchable on the left-hand side panel). You can now transparently batch process entire well plates in the same way you would batch process image folders using Protocols. These fields can be quickly browsed via the slider below the well, or directly by clicking on each field inside the well itself (warning: since display is up to scale, clicking on fields acquired with a 63x objective is slightly tricky, unless you have a ridiculously large screen!)īrowsing is about as fun as it gets, but at some point you do need to get (some) results out.
ScanR (Olympus): folder containing “experiment_descriptor.xml”.Opera (Columbus): folder containing “”.
Opera (Evotek PerkinElmer): “Meas_…” folder.Here is a list of the HCS systems currently supported, and the folder that should be given to the plug-in for proper loading: It also allows batch processing on these well plates using the Protocols environment. This plug-in reads image data from well plates acquired using supported High-Content Screening (HCS) systems, and presents them into an intuitive graphical user interface for easy browsing.